Publications

Selected papers

Papers with Dr. Taylor and collaborators. Earlier physics and biophysics papers are linked on the Research page.

2024Scientific Data

PETAGRAPH / BIOMEDICAL KNOWLEDGE GRAPHS

Petagraph: A large-scale unifying knowledge graph framework for integrating biomolecular and biomedical data

Stear, Mohseni Ahooyi et al. · Includes Deanne M. Taylor

2025Machine Learning
with Applications

CANTOS / BIOMEDICAL TERMINOLOGY

Lahiri et al. · Includes Deanne Taylor

Early research, not yet peer reviewed.

MOSAICGraph embeddings from diffusion operators and persistent spectral components.
ddkg.agentA portable Agent Skill for translating biomedical questions into DDKG-aware Cypher queries.